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Issues (151–175 of 673)

Title T P Status Votes Assignee Version Created Updated Actions
#595: Can I plot a normal matrix like plot(cij)?
task major resolved
#593: What if pdb and dcd do not match?
bug major resolved
#358: How to get per residue rmsf for each frame in the trajectory?
Q&A
task minor resolved
#584: How to modify the "plot(cij)" for "Residue Cross Correlation"
task major resolved
#578: Gromacs: Can we process the ss.xpm secondary structure file and save it in R?
proposal major resolved
#575: Customise the residues and correlation displayed in pymol.dccm
proposal major resolved
#579: Unable to read dcd file
bug major resolved
#455: PCA in the dihedral space
Q&A
proposal critical resolved
#482: Force Field Duration
task trivial resolved
#496: Same sequence PDBs with slightly altered structures give very different networks
task minor resolved
#499: Reading large ensembles
enhancement minor resolved
#502: PCA for tetramer
task major resolved
#505: Radial Distribution Functions (water analysis) and XTC files
enhancement minor resolved
#501: Increasing contact map filter size doesn't reduce community size
task minor resolved
#523: Entropy for the entire protein
enhancement major resolved
#532: NMA_with_arbitrary_defined_rigid_domains
enhancement major resolved
Bio3D Project
#500: how to plot the contribution of each residue in PCA histogram.
task minor resolved
#536: Homodimer ensemble NMA
task major resolved
#569: Which ForceField parameters?
task minor resolved
#504: Non-linear torsional pair correlation
enhancement minor resolved
#576: Question: Torsion PCA
Q&A
task minor resolved
#508: PCA by torsion angles of selected residues
task major resolved
#513: dcd file loading error
Q&A
task minor resolved
#506: Error in flucts[i, ] <- all.modes[[i]]$fluctuations :
ToDo
bug minor resolved
#563: PCA with non-standard residue name
bug major resolved
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