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Issues (1–22 of 22)

Title T P Status Votes Assignee Version Created Updated Actions
#883: help with using distance matrix calculation.
Q&A
task critical new
#871: problem with RMSF plotting
task critical new
#784: PCA analysis (genration of blue red and white colored residues motion in pdb file)
Q&A
task critical new
#738: Can't read a non-proteinogenic amino acid
task critical new
#691: Clustering trajectories and PCA data
Q&A
task critical new
#672: How to read large dcd files; change X-axis to Time (ns); plot secondary structure throughout simulation; plot free energy landscape?
Q&A
task critical new
#423: Reading PDB file from local disk
Q&A
task critical resolved
#377: Principal Component Analysis Plot Coloring
task critical resolved
#268: How can I filter residue cross correlation plots in bio3d?
Q&A
task critical resolved
Bio3D Project
#288: how to load a local pdb files
Q&A
task critical resolved
#244: R CMD check warnings on feature_visualize_dataframe branch
ToDo
task critical resolved
#78: Image recenter rms-fit
task critical resolved
#665: How to generate 2D and 3D free energy landscape plots
Q&A
proposal critical closed
#455: PCA in the dihedral space
Q&A
proposal critical resolved
#801: How to show colormap next to the PC plots?
Q&A
enhancement critical new 1
#631: How to extract multiple chains together using pdbsplit?
ToDo
enhancement critical resolved
#383: Altering radius argument in view.dccm() function.
Q&A
enhancement critical resolved
Bio3D Project
#710: Bio3D-web not working due to Shiny Server license expiration
ToDo
bug critical closed 1
#835: fail to install bio3D packages in Rstudio with R 4.1.1
bug critical resolved
#736: RMSF (the axis no. doesn't correspond with the actual no. of residues)
bug critical resolved
#365: read.pdb() converts chain 'F' to FALSE
bug critical resolved
#7: atom.select() limitations
bug critical resolved
Bio3D Project