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Issues (1–25 of 38)

Title T P Status Votes Assignee Version Created Updated Actions
#471: DCCM PLOT from GROMACS MD Trajectory
ToDo
bug major resolved
#461: couldn't find the expected colour scale in interpolated structure made by mktrj.pca() funtion
task trivial resolved
#446: Want to make distance vs. time and torsion vs. time graphs from MD trajectory
task major resolved
#426: Porcupine plot using Bio3D
Q&A
task minor resolved
#402: write.pdb print segment left-justified
ToDo
bug trivial resolved
#246: view.xyz() multiple args with con
ToDo
bug minor resolved
#356: How to construct cij matrix with non-linear mutual information approach
Q&A
task trivial resolved
#351: disrepancy between dccm values
Q&A
bug major resolved
#341: could not interpret terms "node centrality", "betweenness centrality" "suboptimal paths"
Q&A
task trivial resolved
#337: reading multiple PDB files with Bio3D
Q&A
bug major resolved
#282: Distance matrix using center of mass
task minor resolved
#261: PCA: mktrj.pca produces identical output for p1, p2, etc
bug major resolved
#232: PCA-app, tab #3: Fit
ToDo
enhancement minor resolved
#223: How to extract PDB file
Q&A
task minor resolved
#235: PCA-app, connectivity in view.xyz
ToDo
bug minor resolved
#213: Identifying weights of the edges connecting communities in CNA
Q&A
task minor resolved
#188: selecting representative side chain atoms using atom.select
Q&A
task minor resolved
#189: Is ensemble NMA analysis of DHFR sequence sensitive?
Q&A
proposal trivial resolved
#191: using the cmap function
Q&A
task minor resolved
#175: Is it possible to do charge and/or hydrophobicity analysis of multiple aligned sequences in Bio3d?
enhancement minor resolved
#126: atom.select() and pdbsplit() with blank chains, e.g. chain=NA in atom.select
enhancement major resolved 1
#124: pdbsplit() output filenames always using forced 4 char basename
bug minor resolved 1
#111: Visualize stuff on the master branch
task major resolved
#88: BUG?: trim.pdb doesn't work well with pdb without chain identifier
proposal minor resolved
#59: Modify the plot.blast() function when lots of hits are returned
enhancement minor resolved
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