Merged in feature_shiny_buttons (pull request #8)
OTHER: towards v2.3-1
ENHANCEMENT: plot.matrix.loadings() support "plot=FALSE" option to output loading matrix only
also minorly update to accept arguments passed to lattice::contourplot()
OTHER: fixed minor errors in plot.matrix.loadings.Rd
BUGFIX: Update to https for NCBI blast service
NCBI blast moved from http to https. This updates: - get.blast.R - blast.pdb.R See Issue #407
OTHER: Update version path number
BUGFIX: get.seq.R - NCBI moved sites to HTTPS only
BUGFIX: get.seq.R - NCBI moved sites to HTTPS only (This is a copy from MASTER)
OTHER: upgrade development version
BUGFIX: hmmer fix for infinte mlog.evalue
BUGFIX: added box around hmmer plot in plot.blas.R
ENHANCEMENT: bio3d-web with no database
server/annotation.R use RDS files to store PDB/PFAM annotation data
ENHANCEMENT: switch from DT extension ColVis to Buttons
removed dependency on deprecated DT ColVis extension replaced with DT extension Buttons
BUGFIX: must keep 'csv' button to show 'colvis' button
OTHER: shiny app update to use bio3d proper
loads bio3d.view use bio3d proper with progress functions
OTHER: function name change: cmap.core() --> core.cmap() in server/fit.R
OTHER: updated README with more setup instructions
OTHER: towards v2.3-1
ENHANCEMENT: plot.matrix.loadings() support "plot=FALSE" option to output loading matrix only
also minorly update to accept arguments passed to lattice::contourplot()
OTHER: fixed minor errors in plot.matrix.loadings.Rd
BUGFIX: Update to https for NCBI blast service
NCBI blast moved from http to https. This updates: - get.blast.R - blast.pdb.R See Issue #407
OTHER: Update version path number
BUGFIX: get.seq.R - NCBI moved sites to HTTPS only
BUGFIX: get.seq.R - NCBI moved sites to HTTPS only (This is a copy from MASTER)
OTHER: upgrade development version
BUGFIX: hmmer fix for infinte mlog.evalue
BUGFIX: added box around hmmer plot in plot.blas.R
ENHANCEMENT: bio3d-web with no database
server/annotation.R use RDS files to store PDB/PFAM annotation data
ENHANCEMENT: switch from DT extension ColVis to Buttons
removed dependency on deprecated DT ColVis extension replaced with DT extension Buttons
BUGFIX: must keep 'csv' button to show 'colvis' button
OTHER: shiny app update to use bio3d proper
loads bio3d.view use bio3d proper with progress functions
OTHER: function name change: cmap.core() --> core.cmap() in server/fit.R
OTHER: updated README with more setup instructions