Commits

JanKanis  committed 720efb8

really fix python 2.6 array type code issue

  • Participants
  • Parent commits 5f104d0

Comments (0)

Files changed (1)

File blast2html.py

             hsps = hit.Hit_hsps.Hsp
 
             # In python 2.6 array doesn't accept unicode type codes, but in 3.4 it requires them
-            cover = array(str('B'), [0]) * query_length
+            typecode_B = builtin_str('B')
+            cover = array(typecode_B, [0]) * query_length
             for hsp in hsps:
-                cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(str('B'), [1]) * blastxml_len(hsp)
+                cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(typecode_B, [1]) * blastxml_len(hsp)
             cover_count = cover.count(1)
 
             best_hsp = max(hsps, key=lambda h: h['Hsp_bit-score'])