Error in viral clusters

[amitaleth]

Dear @Ben Bolduc ,

I used my own diamond-blast file with ‘-b’ parameter, but always failed in viral clusters with an AttributeError . The output was attached.

Could you help me solve the problem?

I am looking forward to your reply.

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Here is the command line:

vcontact2 --proteins-fp pc.csv --c1-bin /home/user01/anaconda3/bin/cluster_one-1.0.jar --output-dir ./vcontact2 --db 'None' --pcs-mode MCL --vcs-mode ClusterONE --rel-mode 'Diamond' -b protein.self-diamond.tab

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[Antoine Culot]

Hi Amitaleth,

I had the same issue with the conda install (version 0.9.19), but installing from source (version 0.9.22) solved it

I hope this will help !

Best,

Antoine

[amitaleth]

Hi Antoine,

Thank you for your help!

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I installed vcontact2 with another version, and solved it.

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Best,

Amitaleth

[Ben Bolduc]

Closing, as reporter has fixed the error!