Maybe get percentage of shared Protein Clusters between genomes in selected VC?

[Zongzhi Wu]

Hi, if I wanna select an novel VC(without v207 ref genomes) to figure out the taxonomy hierarchy in this VC, can I calculate percentage of shared Protein Clusters(PCs) between genomes in selected VC based vcontact2 output files and cluster genomes in this VC based on percentage of shared PCs to establish lower taxonom? For example, if the selected VC represent a novel family, maybe I can get the genus taxonomy in this novel VC(family).

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[Zongzhi Wu]

Besides, can I calculate the number of VCs which are novel at family level even order-level based on vContact2 output files. Or I need to use GRAViTy(https://github.com/PAiewsakun/GRAViTy) to verify if these VCs are novel at family-level?

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[Shicong DU]

Hi,

Have you solved the previous issue?

Regards,

Dorothy