ValueError: Inexact indices into sparse matrices are not allowed

[msheam]

I am getting this error : ValueError: Inexact indices into sparse matrices are not allowed. The code is:

vcontact2 --raw-proteins meta2.proteins.faa --rel-mode 'Diamond' --proteins-fp gene2genome.csv --db 'ProkaryoticViralRefSeq94-Merged' --pcs-mode MCL --vcs-mode ClusterONE --c1-bin /data/gent/vo/001/gvo00125/vsc45615/miniconda3/envs/vContact/bin/cluster_one-1.0.jar --output-dir /data/gent/vo/001/gvo00125/vsc45615/NSGV/vcontact2

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[Michelle H]

I am also getting this issue.

[monica steffi matchado]

I am also facing this issue. Could anyone please provide any suggestion

[monica steffi matchado]

I noticed the following post :

The same question was asked https://bitbucket.org/MAVERICLab/vcontact2/issues/84/vcontact2-error-in-protein-module

Changing the scipy version to 1.6.0 and then reinstalling vcontact2 via conda allowed vcontact2 version 11.3 to work for me.