I can not understand own sequence id and refseq sequence id in genome_by_genome_overview.csv

Issue #76 new
qinjunjun created an issue

Hello ,thank you for VconTACT2 .I can not understand own sequence id and refseq sequence id in genome_by_genome_overview.csv

Comments (1)

  1. qinjunjun reporter

    Hello, at vcontact2 output part, I find it:

    One important note is that the taxonomic information is not included for user sequences. This means that each user will need to find their genome(s) of interest and check to see if reference genomes are located in the same VC. If the user genome is within the same VC subcluster as a reference genome, then there's a very high probability that the user genome is part of the same genus. If the user genome is in the same VC but not the same subcluster as a reference, then it's highly likely the two genomes are related at roughly genus-subfamily level. If there are no reference genomes in the same VC or VC subcluster, then it's likely that they are not related at the genus level at all. That said (more below), it is possible they could be related at a higher taxonomic level (subfamily, family, order)

    So, I need to own check to own sequence id( ie.k87_99879_2),and refseq sequence id(ie.Acidianus~bottle-shaped~virus~2), is it right? Or at here,only have own sequence ,not refseq sequence .

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