ERROR:vcontact2: Error in contig clustering & No columns to parse from file

[Zhichao Zhou]

Hi,

I installed the conda env by using this:

conda create -p /path/to/ViWrap-vContact2 -c bioconda -c conda-forge python=3.7 vcontact2=0.9.19 pytables biopython networkx numpy=1.19.0 pandas=0.25.3 scipy==1.6.1 scikit-learn==0.24.1 psutil pyparsing hdf5 clusterone mcl blast diamond

While, I failed many times in testing the run.

Here are the error messages:

“ERROR:vcontact2: Error in contig clustering
ERROR:vcontact2: No columns to parse from file“

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[monica steffi matchado]

I am also facing the same problem. Did u find the solution already?

[Zhichao Zhou]

Now I tried this:

mamba create -c bioconda -c conda-forge -p /path/to/vContact2 python=3.7 vcontact2=0.11.0 pytables biopython networkx numpy=1.19.0 pandas=0.25.3 scipy=1.6.1 scikit-learn=0.24.1 psutil pyparsing hdf5 clusterone mcl blast diamond

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