ERROR:vcontact2: Error in contig clustering & No columns to parse from file
Issue #99
new
Hi,
I installed the conda env by using this:
conda create -p /path/to/ViWrap-vContact2 -c bioconda -c conda-forge python=3.7 vcontact2=0.9.19 pytables biopython networkx numpy=1.19.0 pandas=0.25.3 scipy==1.6.1 scikit-learn==0.24.1 psutil pyparsing hdf5 clusterone mcl blast diamond
While, I failed many times in testing the run.
Here are the error messages:
“ERROR:vcontact2: Error in contig clustering
ERROR:vcontact2: No columns to parse from file“
Comments (2)
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reporter Now I tried this:
mamba create -c bioconda -c conda-forge -p /path/to/vContact2 python=3.7 vcontact2=0.11.0 pytables biopython networkx numpy=1.19.0 pandas=0.25.3 scipy=1.6.1 scikit-learn=0.24.1 psutil pyparsing hdf5 clusterone mcl blast diamond
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I am also facing the same problem. Did u find the solution already?