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  3. vcontact2

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Issues (51–75 of 106)

Title T P Status Votes Assignee Created Updated Actions
#66: ERROR:vcontact2: Unable to identify file format for viral_genomes_g2g.
bug major resolved
#74: VC not in network, but still has overlapping VCs
bug major new
#73: vContact2 output file "genome_by_genome_overview.csv" does not contain all nodes present in output file "c1.ntw"
bug major new
#70: "pandas.errors.ParserError"
bug major resolved
#44: contig clustering/no columns to parse error
bug major new
#68: question about genome_by_genome_overview.csv file
bug major resolved
#61: dtype error
bug major new 2
#65: Error in contig clustering
bug major new
#64: More sequences input, much less it will cluster with refseq207
bug major new
#60: Error at step "Exporting results files"
bug major new
#47: all my viruses absent from output files vContact2 in CyVerse
bug major new 1
#56: Maybe get percentage of shared Protein Clusters between genomes in selected VC?
proposal major new
#55: contact2: Error in identifying excluded genomes
bug major new 2
#43: How to get RefSeq201?
bug major resolved
#32: Method to reduce needed memory when running a huge file
bug major on hold
#27: error during vcontact2 run
bug major resolved
#41: re-running using --blast-fp with Bad file descriptor error
bug major new
#45: Error in viral clusters
bug major resolved
#51: Cannot allocate memory
bug major new
#52: 'dtype' error
bug major new
#50: In the same VC but without Interactions
proposal major new
#33: question about VC Subcluster
bug major resolved
#46: Error in "Building the cluster and profiles"
bug major new
#40: vcontact2 failure when no cluster found
bug major new
#39: TypeError: stat
bug major new
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