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  3. vcontact2

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Issues (76–100 of 106)

Title T P Status Votes Assignee Created Updated Actions
#42: Issue in creating gene-to-genome mapping file
bug major new
#24: pandas.errors.EmptyDataError: No columns to parse from file
bug major resolved
#29: adjusted p-vlaue in genome_by genome_overview files
enhancement major resolved
#26: Calculating genome similarity between viruses
proposal major resolved
#28: vConTACT2 Visualization in Cytoscape
task minor resolved
#18: how to generate the input files for the vcontact run?
proposal major resolved
#37: error
bug critical resolved
#30: "protein(s) without contig" leading to "ERROR:vcontact2: Error in contig clustering"
bug critical resolved
#34: genome_by_genome_overview.csv not being generated
bug major new
#23: The latest ProkaryoticViralRefSeq94-Merged database
task major resolved
#8: A lot of data is discarded during clustering
bug major resolved
#31: pandas.errors.EmptyDataError: No columns to parse from file
bug major new
#14: Missing genome_by_genome_overview.csv in output directory
bug major resolved 3
#22: To generate a taxonomic count table
proposal major on hold
#25: Syntax error on Vcontact2 script
bug critical resolved
#20: Protein clustering comparisons
proposal major resolved
#19: ERROR:vcontact2.exports.summaries: 'Escherichia~phage~PA2'
bug minor duplicate
#15: vcontact freezes at "Building the cluster and profiles" step
bug major on hold
#7: ERROR:vcontact2: Error in exporting the final summary data
bug major resolved 2
#17: ERROR:vcontact2: Error in contig clustering
bug major resolved
#12: 'DataFrame' object has no attribute 'ix'
bug major resolved
#13: Error in exporting the final summary data: first argument must be string or compiled pattern
bug major resolved
#11: vConTACT2 0.9.13 questions
bug major resolved
#10: cannot serialize a bytes object larger than 4 GiB
bug critical closed
#4: Memory Error
bug major on hold
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