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Matthew Turk committed 8ef872a

Getting ready to run the pathfinder

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  • Parent commits 83ddd4b

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Files changed (4)

File 512_unigrid.qsub

+#!/bin/csh
+#PBS -N nibblonia-512
+#PBS -l nodes=8:ppn=16
+#PBS -l walltime=336:00:00
+#PBS -o nibblonia-512.log
+#PBS -e nibblonia-512.log
+#PBS -V
+#PBS -q normal
+#PBS -M mjturk@ucsd.edu
+#PBS -A col117
+#PBS -m abe
+
+setenv NP 128
+setenv MX_RCACHE 0
+setenv MPI_DIR /home/diag/opt/openmpi/1.4.3/intel/
+setenv MPI_DIR /home/diag/opt/mvapich2/1.5.1p1/intel/
+cd $PBS_O_WORKDIR
+$MPI_DIR/bin/mpirun_rsh -hostfile $PBS_NODEFILE -np $NP ./enzo-64.exe -d parameter_file_512.enzo |& tee -a estd.out
+#!/bin/csh
+#PBS -N MUSIC-512
+#PBS -l nodes=1:ppn=32
+#PBS -l walltime=01:00:00
+#PBS -o MUSIC-512.log
+#PBS -e MUSIC-512.log
+#PBS -V
+#PBS -q normal
+#PBS -M mjturk@ucsd.edu
+#PBS -A col117
+#PBS -m abe
+
+cd $PBS_O_WORKDIR
+#$MPI_DIR/bin/mpirun -hostfile $PBS_NODEFILE -np $NP ./ring.exe pv ParticlePositions.0 ParticleVelocities.0 |& tee -a estd.out
+#$MPI_DIR/bin/mpirun -hostfile $PBS_NODEFILE -np $NP ./ring.exe pv ParticlePositions.1 ParticleVelocities.1 |& tee -a estd.out
+#$MPI_DIR/bin/mpirun -hostfile $PBS_NODEFILE -np $NP ./ring.exe pv ParticlePositions.2 ParticleVelocities.2 |& tee -a estd.out
+#$MPI_DIR/bin/mpirun -hostfile $PBS_NODEFILE -np $NP ./ring.exe pv ParticlePositions.3 ParticleVelocities.3 |& tee -a estd.out
+#$MPI_DIR/bin/mpirun -hostfile $PBS_NODEFILE -np $NP ./enzo.exe -d FirstStar_WMAP7_Real1_AMR.enzo |& tee -a estd.out
+./MUSIC 1200kpc_512_unigrid.conf |& tee -a MUSIC.out

File parameter_file.txt

-#
-ProblemType                              = 30      // cosmology simulation
-TopGridRank                              = 3
-TopGridDimensions                        = 512 512 512
-SelfGravity                              = 1       // gravity on
-TopGridGravityBoundary                   = 0       // Periodic BC for gravity
-LeftFaceBoundaryCondition                = 3 3 3   // same for fluid
-RightFaceBoundaryCondition               = 3 3 3
-RefineBy                                 = 2
-
-#
-CosmologySimulationOmegaBaryonNow        = 0.0455
-CosmologySimulationOmegaCDMNow           = 0.2265
-CosmologySimulationDensityName           = GridDensity
-CosmologySimulationVelocity1Name         = GridVelocities_x
-CosmologySimulationVelocity2Name         = GridVelocities_y
-CosmologySimulationVelocity3Name         = GridVelocities_z
-CosmologySimulationCalculatePositions    = 1
-CosmologySimulationParticleVelocity1Name = ParticleVelocities_x
-CosmologySimulationParticleVelocity2Name = ParticleVelocities_y
-CosmologySimulationParticleVelocity3Name = ParticleVelocities_z
-CosmologySimulationParticleDisplacement1Name = ParticleDisplacements_x
-CosmologySimulationParticleDisplacement2Name = ParticleDisplacements_y
-CosmologySimulationParticleDisplacement3Name = ParticleDisplacements_z
-
-#
-#  define cosmology parameters
-#
-ComovingCoordinates                      = 1       // Expansion ON
-CosmologyOmegaMatterNow                  = 0.272
-CosmologyOmegaLambdaNow                  = 0.728
-CosmologyHubbleConstantNow               = 0.704     // in 100 km/s/Mpc
-CosmologyComovingBoxSize                 = 1.2    // in Mpc/h
-CosmologyMaxExpansionRate                = 0.015   // maximum allowed delta(a)/a
-CosmologyInitialRedshift                 = 99      //
-CosmologyFinalRedshift                   = 0       //
-GravitationalConstant                    = 1       // this must be true for cosmology
-#
-#
-ParallelRootGridIO                       = 1
-ParallelParticleIO                       = 0
-PartitionNestedGrids                     = 1
-CosmologySimulationNumberOfInitialGrids  = 1
-
-RedshiftDumpName = RD
-DataDumpName = DD
-
-CosmologyOutputRedshift[00] = 30
-CosmologyOutputRedshift[01] = 25
-CosmologyOutputRedshift[02] = 24
-CosmologyOutputRedshift[03] = 23
-CosmologyOutputRedshift[04] = 22
-CosmologyOutputRedshift[05] = 21
-CosmologyOutputRedshift[06] = 20
-CosmologyOutputRedshift[07] = 19
-CosmologyOutputRedshift[08] = 18
-CosmologyOutputRedshift[09] = 17
-CosmologyOutputRedshift[10] = 16
-CosmologyOutputRedshift[11] = 15
-CosmologyOutputRedshift[12] = 14
-CosmologyOutputRedshift[13] = 13

File parameter_file_512.enzo

+#
+ProblemType                              = 30      // cosmology simulation
+TopGridRank                              = 3
+TopGridDimensions                        = 512 512 512
+SelfGravity                              = 1       // gravity on
+TopGridGravityBoundary                   = 0       // Periodic BC for gravity
+LeftFaceBoundaryCondition                = 3 3 3   // same for fluid
+RightFaceBoundaryCondition               = 3 3 3
+RefineBy                                 = 2
+
+#
+CosmologySimulationOmegaBaryonNow        = 0.0455
+CosmologySimulationOmegaCDMNow           = 0.2265
+CosmologySimulationDensityName           = GridDensity
+CosmologySimulationVelocity1Name         = GridVelocities_x
+CosmologySimulationVelocity2Name         = GridVelocities_y
+CosmologySimulationVelocity3Name         = GridVelocities_z
+CosmologySimulationCalculatePositions    = 1
+CosmologySimulationParticleVelocity1Name = ParticleVelocities_x
+CosmologySimulationParticleVelocity2Name = ParticleVelocities_y
+CosmologySimulationParticleVelocity3Name = ParticleVelocities_z
+CosmologySimulationParticleDisplacement1Name = ParticleDisplacements_x
+CosmologySimulationParticleDisplacement2Name = ParticleDisplacements_y
+CosmologySimulationParticleDisplacement3Name = ParticleDisplacements_z
+
+#
+#  define cosmology parameters
+#
+ComovingCoordinates                      = 1       // Expansion ON
+CosmologyOmegaMatterNow                  = 0.272
+CosmologyOmegaLambdaNow                  = 0.728
+CosmologyHubbleConstantNow               = 0.704     // in 100 km/s/Mpc
+CosmologyComovingBoxSize                 = 1.2    // in Mpc/h
+CosmologyMaxExpansionRate                = 0.015   // maximum allowed delta(a)/a
+CosmologyInitialRedshift                 = 99      //
+CosmologyFinalRedshift                   = 0       //
+GravitationalConstant                    = 1       // this must be true for cosmology
+#
+#
+ParallelRootGridIO                       = 1
+ParallelParticleIO                       = 0
+PartitionNestedGrids                     = 1
+CosmologySimulationNumberOfInitialGrids  = 1
+
+RedshiftDumpName = RD
+DataDumpName = DD
+
+CosmologyOutputRedshift[00] = 30
+CosmologyOutputRedshift[01] = 25
+CosmologyOutputRedshift[02] = 24
+CosmologyOutputRedshift[03] = 23
+CosmologyOutputRedshift[04] = 22
+CosmologyOutputRedshift[05] = 21
+CosmologyOutputRedshift[06] = 20
+CosmologyOutputRedshift[07] = 19
+CosmologyOutputRedshift[08] = 18
+CosmologyOutputRedshift[09] = 17
+CosmologyOutputRedshift[10] = 16
+CosmologyOutputRedshift[11] = 15
+CosmologyOutputRedshift[12] = 14
+CosmologyOutputRedshift[13] = 13