Source

rockstar / scripts / pleiades.pbs

#!/bin/sh
#PBS -l select=64:ncpus=12:model=wes
#PBS -l walltime=15:59:00
#PBS -N tasks
#PBS -j oe
#PBS -o output.dat

#Load NASA environment
source /usr/share/modules/init/bash
module load mpi-intel/4.0.028
module load comp/intel/11.0.083_64

#Change to working directory
cd $PBS_O_WORKDIR
cd shared/cores

#Remove outputs from previous runs
rm test_output.dat

#Start the server
/u/pbehrooz/Rockstar/rockstar -c /u/pbehrooz/pleiades.cfg &> server.dat &

#Copy the auto-rockstar.cfg file to the working directory
perl -e 'sleep 1 while (!(-e "/nobackup/pbehrooz/halos/auto-rockstar.cfg"))'
mv /nobackup/pbehrooz/halos/auto-rockstar.cfg .

#Start the intel MPI controller
mpdboot --file=$PBS_NODEFILE --ncpus=1 --totalnum=`cat $PBS_NODEFILE  | sort -u | wc -l` --ifhn=`head -1 $PBS_NODEFILE`  --rsh=ssh --mpd=`which mpd` --ordered

#Execute the reader processes
mpiexec -ppn 2 -np 125 /u/pbehrooz/Rockstar/rockstar -c auto-rockstar.cfg >> test_output.dat 2>&1 &
sleep 20

#Execute the analysis processes
mpiexec -ppn 12 -np 768 /u/pbehrooz/Rockstar/rockstar -c auto-rockstar.cfg >> test_output.dat 2>&1

#Finish
mpdallexit