Today I got into another breaking bug.
I was working on a project and when I went to lunch my coworker fixed some things on some pages and controller. When I returned I launched retrieval of metadata again from salesforce. Plugin correctly shown a dialog of diff, but there were no chances my coworker has done, but instead some local changes from before. I know this, because I double checked code from salesforce org and I'm 100% sure that there were no code from my coworker there in diff.
This is still on 1.0.3.