Overview

This task allows you to read the binary GLF files produced by ATLAS task glf.

Input

• glf.gz file

Output

Printed to screen. The columns are: chromosome, position, maximum phred scaled genotype likelihood, depth, RMS mapping quality, the 10 phred scaled genotype likelihoods

Usage Example

./atlas task=printGLF glf=example.glf.gz

Engine Parameters

Engine parameters that are common to all tasks can be found here.