- edited description
group.abund.Taxa() seems to have problems with blanks
Issue #2
new
Dear developer,
whenever I'am checking Taxa like the following:
group.abund.Taxa(data=data_endo, taxa="Pla4 lineage", meta=meta_endo, meta.factor="Soil", drop.unclassified=TRUE, rank = "c")
I get the following error message: Error in .group.rank2(data = elem, meta = meta, meta.factor = meta.factor, : Error: no taxa present in the dataset
traceback()
3: stop("Error: no taxa present in the dataset")
2: .group.rank2(data = elem, meta = meta, meta.factor = meta.factor,
relative.abund = TRUE, taxa = taxa, drop.unclassified = drop.unclassified,
rank = rank)
1: group.abund.Taxa(data = data_endo, taxa = "Pla4 lineage", meta = meta_endo,
meta.factor = "Soil", drop.unclassified = TRUE, rank = "c")
It seems that all taxa, no matter which taxonomic level, are producing such an error if there is a space or blank in between.
Maybe there is a easy workaround? kind regards, itsab
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Edit: traceback() format set as code area