Commits

Author Commit Message Labels Comments Date
jeremy goecks
Code cleanup and script packing.
jeremy goecks
Open links to galaxy screencasts in pages in an overlay.
jeremy goecks
Remove header from displayed page.
Greg Von Kuster
Filter out sharing roles from being displayed on permissions forms unless they belong to the current user.
Greg Von Kuster
Properly handle double quotes in library item text field contents.
jeremy goecks
Fix unicode error when displaying pages.
Kanwei Li
use shapes for people without gravatar pics
James Taylor
Temporarily revent jquery and jquery.tipsy to 1.3 versions
Greg Von Kuster
Sort the datasets by name when browsing a library from the Data Libraries view. Add a cleanup method to the functional test script for forms and requests - functional tests for libraries should now pass.
Greg Von Kuster
Do not display the work None if the libray synopsis is blank - I know there is a better way to do this, but I cannot think of it right now...
Greg Von Kuster
Add a synopsis column to the library table, fix displaying the mast head when accessing a data library from an external url, and eliminate the display of all non-private roles on permissions forms.
Daniel Blankenberg
Add '/' to controller names in url_for calls in display_applications to disable route memory.
Daniel Blankenberg
Update display applications to work through the view history (before import) display.
jeremy goecks
Added annotations to display templates so that users see annotations when viewing an item. Also show labels and placeholders for input elements in workflow display page.
Kanwei Li
new tipsy works with jQuery 1.4
Kelly Vincent
Updated two test files so BWA wrapper tool will pass
re...@localhost
merge
re...@localhost
fixes to allow downloading of composite files from a library. if a single file is chosen, act_on_multiple_datasets is used and zip is always the format. if act_on_multiple_datasets encounters any composite files, it adds the html file and all the files in extra_files_path to the archive
rc
LIMS: using threads for data transfer. first pass
jeremy goecks
Rudimentary support for embedding of histories, datasets, and workflows into pages. Specifics: (1) added menus for inserting links to galaxy items and for embedding items to page editor; (2) framework code for producing HTML for embedded items on page display; and (3) toggling to display/hide embedded item content. Smaller improvements include (a) refactoring of controller code to create useful mixins and facilitate code reuse; (b) moving all fugue icons into static/images/fugue directory; and (c) improvement to display templates.
Kanwei Li
upgrade to jquery 1.4.1
Kanwei Li
trackster: clicking enter should continue
rc
LIMS data transfer: - Fixed some config variable issues - Now for the time being, Galaxy can transfer one dataset at a time.
Daniel Blankenberg
Fix typo
Daniel Blankenberg
Fix BAM groom_dataset_content and set_meta methods to respect exit codes.
jeremy goecks
Make it possible to place grids in panels; specifically, make it possible to display a grid with the Galaxy masthead.
Daniel Blankenberg
Fix for Display Applications viewing access protected data.
rc
Migration script fix. This restores the 'request' table if it got deleted in the previous script (only for sqlite).
Daniel Blankenberg
Introduce a new style of external display applications. Display applications can now be entirely defined using xml files, similar to how tools are integrated. Applications are assigned to specific datatypes (i.e. on an extension basis) via the datatypes_conf.xml file. View the sample display applications at /display_applications/[ucsc/]*.xml for examples of usage. Provided sample display applications: View BAM files (with bai indexes) at UCSC using BigDataUrl support. ucsc interval as bed viewer - not enabled by default (the old style display app is…
Greg Von Kuster
Add the library description to the browse library page, and update the tool config for main.
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