James Taylor committed ebf9a4b

Note about issue #10

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 Find regions of first bed file that overlap regions in a second bed file. The
 output preserves all fields from the input. 
+NOTE: -u and -d options are currently not functional!
 usage: %prog bed_file_1 bed_file_2
     -m, --mincols=N: Require this much overlap (default 1bp)
     -u, --upstream_pad=N: upstream interval padding (default 0bp)
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