This repository provides the source code and data accompanying the manuscript "Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity" by A.A. Gritsenko, S. Weingarten-Gabbay, S. Elias-Kirma, R. Nir, D. de Ridder and E. Segal

Last updated: May 2017

Directory structure

  • /data/ contains raw data used for the analysis
  • /figures/ contains figures generated for the manuscript, as well as additional figures used for supplementary analyses
  • /python/ contains the main code for the analyses presented in the manuscript
  • /results/ is designated for storing analyses results
  • /scripts/ contains auxiliary scripts for grid computing
  • /tools/ contains third-party tools used for analyses
  • /c/ contains python module source code use for auxiliary analyses