Anima is an image analysis workflow environment on top of Anduril.

Anima acts as a superplatform for the existing imaging applications, and can run components and software written in Java, Bash (i.e. any binary), Perl, Python, R, or Matlab. In addition Anima provides API to the batch environments of Fiji, CellProfiler and ImageMagick.

See installation and other information from: http://anduril.org/anima/

Read about Anima: Anima: Modular workflow system for comprehensive image data analysis. Ville Rantanen, Miko Valori and Sampsa Hautaniemi, Front. Bioeng. Biotechnol. doi: 10.3389/fbioe.2014.00025 http://journal.frontiersin.org/Journal/10.3389/fbioe.2014.00025/

This repository is compatible with Anduril 2.x series! See the other repository for Anduril 1.x compatibility https://bitbucket.org/anduril-dev/anima1

The development of this software has received funding from the European Communit y's Seventh Framework Programme FP7/2007-2011 under grant agreement no. 201837.

Development and stable branches

The development of these components happens in "anduril2" branch. Tested and accepted features are commited in the "stable" branch.