DEan
Issue #42
resolved
deseq2 option currently gives the same output when testing more than one condition. For example when 3 conditions following files are the same and they should not. deseq2_Cond1vsCond2.csv, deseq2_Cond2vsCond3.csv and deseq2_Cond1vsCond3.csv. When using deseq and edgeR the problem seems to not be present (files are different).
Comments (3)
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- changed status to resolved
Multiple conditions are now correctly evaluated by DESeq2. I also added an array of RData objects that can be used for plotting.
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This is the code I use for deseq2