1. antiSMASH development team
  2. antiSMASH
  3. docker

Overview

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antiSMASH files for Docker

This repository contains a number of Dockerfiles to build different antiSMASH containers. Missing from all these containers is the EC prediction code, because there currently is no EC predictor that I can ship freely.

Base

Base image with all the antiSMASH dependencies installed

Testenv

Base image plus development dependencies to run the continuous integration tests.

Standalone

This is a standalone antiSMASH build that contains the CLI application, and all the required dependencies. As this container also ships the ClusterBlast and PFAM database, it is rather large, but you don't need to worry about needing to download anything but this container.

Standalone lite

Similar to the standalone container, but requires the ClusterBlast and PFAM databases to be provided as a volume as a trade-off for a smaller image size.

Runsmash lite

The antiSMASH job runner that powers the official antiSMASH website. This does include the antiSMASH CLI app with all required dependencies. Note that like the standalone-lite image, the ClusterBlast and PFAM databases are not included. Like for the standalone images, no EC predictor is included either.

Websmash

The web UI componnent of the official antiSMASH website. Configuration defaults can be easily changed using an external settings file.

antismash

A version of the standalone antiSMASH build without the wrapper magic. Use this to run from workflow management tools like Common Workflow Language (CWL).

Debian FPM

Small image to build .deb files for the other images using FPM.