running docker on OSX
Issue #1
new
Hi Kai,
Great idea with the Docker container for Antismash. I have a small issue to report.
OSX has an old version of coreutils so readlink
doesn't work correctly. My work-around is to install coreutils from homebrew (brew install coreutils). This adds 'g' in front of the GNU coreutils. Then you can change the readlink
s to greadlink
s in your Docker script and all will be well.
Thanks, zach cp
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while the read issue works, I now encounter a permissions error.
File "/usr/local/bin/run_antismash.py", line 428, in main os.mkdir(options.outputfoldername) OSError: [Errno 13] Permission denied:
This is on the latest dockerfile. Seems like the write directory should be mounted
rw
but is being denied. I tried runningrun_antismash
with sudo but then theres new issues where the docker daemon is no longer recognized.I'll let you know if I figure out the Mac OSX docker mounting problem.
zcp