Snippets

Biosig Lab Submission of manual input job mmCSM-PPI

Created by Carlos Miranda Rodrigues

File submission_manual_input_mmcsm-ppi.BUILD Added

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+import argparse
+import requests
+import sys
+
+URL = "http://biosig.unimelb.edu.au/mmcsm_ppi/api/manual"
+
+def main(args):
+    pdb_file = args.pdb_file
+    mutations_list = args.mutations_list
+
+    files_to_submit = {"pdb_file": pdb_file,"mutations_list": mutations_file}
+
+    req = requests.post(URL, files=pdb_to_submit)
+    print(req.json())
+    return True
+
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser(description='Job submission for manual input prediction - mmCSM-PPI')
+    parser.add_argument('--pdb_file', dest='pdb_file', type=file, help='PDB file', required=False, default=None)
+    parser.add_argument('--mutations_list', dest='mutations_list', type=file, help='Mutation list file. One entry per line. Mutations must be separated by a semi-colon (;). E.g.: A E346K;A T118P')
+
+    args = parser.parse_args()
+    if args.pdb_file == None:
+        print('usage: main.py [-h] [--pdb_file PDB_FILE]')
+        print('[--mutations_list MUTATION]')
+        print('main.py: error: missing arguments: Please provide --pdb_file')
+        sys.exit(1)
+    main(args)
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