I compared, and azi02:~borislav/local_data/www.epa.gov/superfund is MORE complete than the corresponding directory of #78. Keep this. (We should keep in mind that #78 was a targeted download, not a full one.)
I've renamed this slightly so that Issue #41 has its own directory, and www.epa.gov/superfund is under it.
pub05:/var/local/borislav/local_data/www.epa.gov -> pub05:/var/local/borislav/local_data/i41_www.epa.gov_superfund/www.epa.gov
<<Edited later to get the names right. Sorry for the confusion.>>
Please double check your server name @Greg Kochanski . You are talking about azi02:~borislav/local_data/ but that directory has been empty for quite some time. The data has not been there for days. You are not making moves on that server.