Questions on Phenotype file input format
Issue #1
new
Hi there,
Thanks for FAST. We are planning to use it in our analysis. One small glitch with regards to phenotype file, what if our study is not a family based and how will the format will be. Because in the format section it mentions that the file should contain mandatory 6 lines with Family id, maternal and paternal id.
Thanks in advance for your response,.
* Phenotype + Covariate File (option --trait-file) : This file must be tab delimited . This file describes the phenotypes and covariates for each individual following PLINK format The first six columns are mandatory:*
Comments (1)
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For unrelated individuals, I think you can just give each individual a unique family id and maternal and paternal ids.