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This part describes how to run the examples included with FAST. All the example data and output are located in ./Example directory of the distributed application (available from downloads).
To run FAST with Linear regression, follow these steps:
(a) cd Example (b) ./run.Linear.geno.sh
e.g. if you are in Mac OS, do : cd <your FAST_home_directory> cp bin/macOS/FAST . repeat step a) and b).
If you still get the error "cannot execute binary file", you may need to compile FAST. See COMPILATION in Readme.txt
If you have successfully completed (a) and (b), you can prepare a combined report from all methods as :
c) cd <your FAST_home_directory> d) ./FAST.utils.sh -r ./Example/OUT/output Linear 0.0001 0.0001
You can run for type Logistic or Summary similarly, just replace the file in step (b) with the appropriate file, see inside Example/.
Alternatively, if you have successfully completed (a) and (b), you can prepare qq plots from all methods as :
c) cd <your FAST_home_directory> d) ./FAST.utils.sh -p ./Example/OUT/output Linear
You can run for type Logistic or Summary similarly, just replace the file in step (b) with the appropriate file, see inside Example/.
To see how to run the utility functions, do the following :
a) cd <your FAST_home_directory> b) ./FAST.utils.sh
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