AttributeError: 'generator' object has no attribute 'items'

Issue #29 new
Former user created an issue

When I run the example data using command ./run.sh, I got: 2021-04-28 09:34:30 oncodrivefml INFO -- Using HG19 as reference genome 2021-04-28 09:34:30 oncodrivefml INFO -- Running analysis 2021-04-28 09:34:30 oncodrivefml INFO -- Building regions tree Traceback (most recent call last): File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/bin/oncodrivefml", line 11, in <module> sys.exit(cmdline()) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/click/core.py", line 829, in call return self.main(args, kwargs) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/click/core.py", line 782, in main rv = self.invoke(ctx) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/click/core.py", line 1066, in invoke return ctx.invoke(self.callback, ctx.params) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/click/core.py", line 610, in invoke return callback(args, **kwargs) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/oncodrivefml/main.py", line 104, in cmdline override_config) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/oncodrivefml/main.py", line 56, in main analysis.run() File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/oncodrivefml/oncodrivefml.py", line 189, in run save_pickle=self.generate_pickle) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/oncodrivefml/load.py", line 230, in load_and_map_variants elements_tree = load_elements_tree(elements_file) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/bgcache/decorator.py", line 81, in new_function cached_value = old_function(input_file) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/oncodrivefml/load.py", line 181, in load_elements_tree return build_regions_tree(elements) File "/share/pub/yaoyh/software/anaconda3/envs/oncodriverfml/lib/python3.5/site-packages/oncodrivefml/load.py", line 164, in build_regions_tree for i, (k, allr) in enumerate(regions.items()): AttributeError: 'generator' object has no attribute 'items'

Please tell me how to solve this problem. Thanks.

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