1. Berkeley Lab Avatar Berkeley Lab
  2. Untitled
  3. CheckV

Issues

Filter by:

Advanced search

Issues (1–25 of 125)

Title T P Status Votes Assignee Created Updated Actions
#98: DIAMOND task failed. Program should be rerun.
bug major resolved
#126: what difference between 'Supporting Code' and dRep ?
proposal minor closed
#123: diamond v2.1.9 causes segmentation fault
bug major resolved
#128: Run DIAMOND error
bug major resolved
#108: Issue when downloading checkv db
bug blocker resolved
#125: viruses.fna and proviruses.fna
bug major resolved
#42: Add additional quality criteria
proposal minor new
#80: Clarification about the aai score calculation
bug minor new
#100: Use PyHMMER
enhancement minor new
#124: what mean of provirus?
bug major resolved
#66: pytest
bug minor closed
#101: Contig >1.5x longer than expected genome length
bug major resolved
#116: A problem occurred while running prodigal
bug major closed
#121: download db issue
bug major closed
#103: Bug in gene calling with multiple threads
bug major closed
#104: Is it possible to trim host flanking contamination rather than remove the contig entirely?
task minor resolved
#107: Python version >3.8
enhancement minor closed
#109: RNA viruses
task critical resolved
#112: how to calculate vOTUs abundance based on the '<my_clusters.tsv>' ?
bug major resolved
#113: Explain the meaning of some columns in rapid genome clustering results
bug major resolved
#115: deduplicate viral contig using checkV supporting code
bug major resolved
#105: Host vs. viral genes?
task major resolved
#106: Disk quota exceeded when using hmmsearch with 1000G memory
bug major resolved
#119: what means of 'Complete' and 'not-determined' in 'quality_summary.tsv' ?
bug major resolved
#122: perform all-vs-all blastn of sequences
bug major resolved
  2. 1
  3. 2
  4. 3
  5. 4
  6. 5