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Issues (76–100 of 125)

Title T P Status Votes Assignee Created Updated Actions
#61: Why input 2707 virome contigs only have 2518 results？
bug major resolved
#63: questions about rerunning results of contigs already removing contamination
bug major resolved
#65: Unable to install checkv
bug major resolved
#68: DB download server having issues?
bug blocker resolved
#67: Aniclust Output
task trivial resolved
#64: What to do with low-confidence Proviruses
enhancement minor resolved
#60: The largest virus to date？
bug critical resolved
#59: Improve ITR detection
enhancement minor new
#48: quality_summary.tsv lacks separate entries when >=2 proviruses are found on same contig
proposal minor new
#58: Add cut_ga/cut_nc/cut_tc thresholds to the HMMs
proposal minor new
#44: version 0.8.1 vs version 0.7
bug major resolved
#39: Resume after DIAMOND crash may continue with null data
bug minor resolved
#14: Check input FASTA for duplicate identifiers to avoid error
bug minor resolved
#43: _csv.Error: field larger than field limit (131072)
bug minor resolved
#26: Genome copy number estimation v. slow for v. long sequences
bug major resolved
#41: Error in README markdown for tables
bug trivial resolved
#11: Extract viral genome from contig
task minor resolved
#32: StopIteration exception
bug major resolved
#25: Add environment variable to the docker run command
bug major resolved
#40: contamination.tsv contains NAs for many columns
bug major resolved
#38: Recommended cutoffs for analyzing CheckV results?
enhancement major resolved
#36: HMM Marker Gene Database
proposal minor resolved
#33: 'no viral genes detected' in low-quality
bug major resolved
#35: formatting headers in .fna output
enhancement minor resolved
#34: Differences in Results between CheckV and Virsorter for Detection of Jumbo Bacteriophages
enhancement major resolved
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