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Issues (101–125 of 125)

Title T P Status Votes Assignee Created Updated Actions
#37: The total number of contigs in the checkv proviruses.fna and viruse.fna is larger than the original number
bug major resolved
#31: Can't build the image via Docker
bug major resolved
#29: Error: database file not found while using FASTA file (Spiroplasma-virusSpV4.fasta ).
bug major resolved
#30: ZeroDivisionError in checkv contamination
bug major resolved
#18: Error: 1/80 hmmsearch tasks failed
bug major resolved
#27: Error: 1/80 hmmsearch tasks failed. Program should be rerun
bug major resolved
#28: cannot download https://portal.nersc.gov/CheckV/checkv-db-v1.0.tar.gz
bug minor resolved
#24: Add instructions on setting CHECKVDB environment variable
proposal major resolved
#23: Complete genomes with no viral genes
bug major resolved
#22: Can't download checkV database
bug major resolved
#12: StopIteration error when running checkv completeness
bug major resolved
#20: CheckV v0.7.0: completeness RuntimeError: generator raised StopIteration
bug major resolved
#21: Error: checkv: command not found, when running checkv in HCP
bug major resolved
#16: Error in Quick Start guide
bug minor resolved
#19: Can't dowload checkV_database
proposal critical resolved
#17: ZeroDivisionError
bug major resolved
#13: Report % Ns in contig
enhancement trivial new
#2: DIAMOND error
bug major resolved
#8: Repeat sequence of "NNNNNN..." being picked up by CheckV
enhancement minor resolved
#6: Completeness over 100%
task minor resolved
#4: Typo in error message
bug trivial resolved
#5: ZeroDivisionError: float division by zero
bug major resolved
#9: viruses.fna contains input sequences that have 'no viral genes detected' (as per quality_summary.tsv)
enhancement minor new
#3: Excel compatible output format
bug trivial new
#1: Downloading database
bug major resolved
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