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Issues (1–25 of 45)

Title T P Status Votes Assignee Created Updated Actions
#126: what difference between 'Supporting Code' and dRep ?
proposal minor closed
#42: Add additional quality criteria
proposal minor new
#80: Clarification about the aai score calculation
bug minor new
#100: Use PyHMMER
enhancement minor new
#66: pytest
bug minor closed
#104: Is it possible to trim host flanking contamination rather than remove the contig entirely?
task minor resolved
#107: Python version >3.8
enhancement minor closed
#118: Please remove duplicated sequence IDs from the input FASTA file
bug minor resolved
#120: Supporting Scripts - Command Not Found
bug minor resolved
#96: AAI top hit
bug minor resolved 1
#97: Diamond blastp failure in the completeness step
bug minor resolved
#95: Circularized virus
bug minor resolved
#93: duplicate sequences in checkv-db-v1.3
bug minor resolved
#91: fna output
bug minor resolved
#87: Missing checkv_reps.dmnd in db-1.2?
bug minor resolved
#82: Refactoring get_logger function
proposal minor resolved
#84: Switch to vProdigal
enhancement minor resolved
#45: Alternative genetic codes
enhancement minor resolved
#56: Detect chimerism
proposal minor resolved
#55: Expanded genome database
proposal minor resolved 1
#54: End to end prophage detection
enhancement minor resolved
#52: Plasmid identification
enhancement minor resolved
#53: Taxonomic classification
enhancement minor resolved
#79: Need clarification about aai_top_hit
bug minor resolved
#74: Question about converting `aai_error` to `aai_score`
enhancement minor resolved
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