Commits

Edward Kirton committed ab2a4a6

keep contaminant-filtered outfile (a previously deleted tmpfile)

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Files changed (1)

lib/iTagger/ReadQC.pm

     return unless $numInput;
 
     # FILTER CONTAMINANTS.  THERE MAY BE ZERO OR MORE CONTAM DB FILES.
-    my $noContamFile = "$tmpdir/noContam.fastq";
+    my $noContamFile = "$dir/noContam.fastq";
     my $numNoContam;
     if ( exists($config->{DUK}->{CONTAM_DB}) )
     {