Commits

Author Commit Message Labels Comments Date
Edward Kirton
improve help text (README)
Edward Kirton
expand README
Edward Kirton
expand README
Edward Kirton
fixed method description
Tags
v1.2
Edward Kirton
define java -Xmx1g again
Edward Kirton
remove Logger (Log4Perl)
Edward Kirton
add simple script to concatenate reads for picrust
Edward Kirton
add primer trim stats output even if skipped step
Edward Kirton
add field descriptions to documentation
Edward Kirton
don't specify java max heap, leave to env
Edward Kirton
don't specify java ram (rdp classifier) in perl script, instead specify in environment
Edward Kirton
fix typo
Edward Kirton
eliminate unnecessary check for duplicate read IDs
Edward Kirton
Make cutadapt optional
Edward Kirton
add file summary list to README file
Edward Kirton
correct flash version output
Edward Kirton
support for ".repNum" filenames (for replicates)
Edward Kirton
support for replicates by giving each unique suffix
Edward Kirton
fixed bug where logdie wasn't dying!
Tags
v1.1
Edward Kirton
add script to run RDP classifier outside of pipeline
Edward Kirton
output warning if infiles not found
Edward Kirton
update version number to 1.1
Edward Kirton
make Fast?Db.pm output reformatted IDs by default.
Edward Kirton
copy libs file to outdir
Edward Kirton
add option to Fasta/Fastq iterators to return original header
Edward Kirton
ReadQC summary stats no longer thinks CUTADAPT required. Also updated its logger.
Edward Kirton
fix molecular barcode autodiscovery
Edward Kirton
Logger class no longer opens db connection for msgs below threshold
Edward Kirton
correct pod
Edward Kirton
updated logger - no persistent connections
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