installation issue

Issue #169 invalid
Kanika Mahra created an issue

when i do make inside build i get this error : make
[ 4%] Checking the git repository for changes...
[ 4%] Built target check_git_repository
[ 36%] Built target zlib
[ 68%] Built target htslib
[ 72%] Building CXX object src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o
In file included from /home1/vineet/anaconda3/x86_64-conda-linux-gnu/include/c++/11.2.0/chrono:42,
from /home1/vineet/anaconda3/x86_64-conda-linux-gnu/include/c++/11.2.0/bits/this_thread_sleep.h:38,
from /home1/vineet/anaconda3/x86_64-conda-linux-gnu/include/c++/11.2.0/thread:44,
from /home1/vineet/tools/metaBAT/src/contigOverlaps.cpp:18:
/home1/vineet/anaconda3/x86_64-conda-linux-gnu/include/c++/11.2.0/ctime:80:11: error: 'timespec_get' has not been declared in '::'
80 | using ::timespec_get;
| ^~~~
make[2]: *** [src/CMakeFiles/contigOverlaps.dir/build.make:63: src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:210: src/CMakeFiles/contigOverlaps.dir/all] Error 2
make: *** [Makefile:141: all] Error 2

Comments (2)

  1. Rob Egan

    Please provide the full log and steps you are attempting, along with the platform and OS version. This looks to be an old version from Conda that was created by a third party and never part of our official code base.

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