Compilation error metabat2 in ubuntu 14.04

[hansm@nioz]

Scons is only creating a metabat executable and not the metabat2. The build is terminating with the following error : src/metabat2.cpp: In function ‘int main(int, char)’: src/metabat2.cpp:382:50: error: expected ‘#pragma omp’ clause before ‘proc_bind’ #pragma omp parallel for num_threads(numThreads) proc_bind(spread) schedule(dynamic) ^ src/metabat2.cpp: In function ‘void gen_tnf_graph(Graph&, Similarity)’: src/metabat2.cpp:1040:47: error: expected ‘#pragma omp’ clause before ‘proc_bind’ scons: * [src/metabat2.o] Error 1 scons: building terminated because of errors.

[Don Kang]

You need g++ >= 4.9

[hansm@nioz]

Thx Don, much better with 5.4.1, metabat2 has been created. But no successful run until yet due to segmentation faults.

[Don Kang]

What was your command line? Paste the log message with --verbose option here. Alternatively, you can send your data that I can take a look where the issue happened. Here is the info:

Upload Server: upload.nersc.gov

To upload data using ftp on the command line type:

ftp upload.nersc.gov

Enter the user name and password when prompted.

Please see http://www.cs.colostate.edu/helpdocs/ftp.html for a list of ftp commands.

You can also use an FTP client like Filezilla (https://filezilla-project.org/) if you prefer GUI based tools.

[hansm@nioz]

Now it is running correct. I checked the bam file which wasn't sorted. Thanks for your quick response.