- changed status to resolved
Accelerate metabat with GPU
Issue #60
resolved
There are a few stages of metabat that could greatly benefit by using a GPU to process the data.
The N^2 matrix is already optimized to perform its calculations by tiles and these tiles can be offloaded to a GPU fairly easily.
Additionally TNF calculations can likely be accelerated.
Unlikely that LPA clustering can be accelerated, but MCA likely could
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Attempted and failed. This would really require a refactoring of the use of std::string and other helpers and also the removal and replacement of the OpenMP optimizations. Not worth the effort at this time.