Accelerate metabat with GPU

Issue #60 resolved
Rob Egan created an issue

There are a few stages of metabat that could greatly benefit by using a GPU to process the data.

The N^2 matrix is already optimized to perform its calculations by tiles and these tiles can be offloaded to a GPU fairly easily.

Additionally TNF calculations can likely be accelerated.

Unlikely that LPA clustering can be accelerated, but MCA likely could

Comments (1)

  1. Rob Egan reporter

    Attempted and failed. This would really require a refactoring of the use of std::string and other helpers and also the removal and replacement of the OpenMP optimizations. Not worth the effort at this time.

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