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Issues (1–20 of 20)

Title T P Status Votes Assignee Created Updated Actions
#129: Reduce blocking overhead of --checkpoint option
enhancement minor invalid
#74: relative abundance of bins
enhancement minor resolved
#108: add more progress / parallelism to long running stages
enhancement minor resolved
#104: Better error reporting while reading input files
enhancement major new
#110: tagged archive :: program version display GIT-NOTFOUND
enhancement minor resolved
#90: Present Abundance of Bins in output
enhancement trivial resolved
#161: reduce peak memory in jgi_summarize_bam_contig depths with very large assemblies
enhancement minor resolved
#162: Investigate --includeEdgeBases
bug major new
#114: Investigate better default value for --minCV
enhancement major new
#103: support read groups within bam files for sample identification
proposal major new
#68: Missing Contigs from metabat2 output
proposal minor resolved
#60: Accelerate metabat with GPU
enhancement minor resolved
#59: Add progress indicator for long running operations
enhancement minor resolved
#62: Large singleton contigs should qualify as bins
bug major resolved
#65: gcc 8.1.1 on ascent fails to build jgi_summarize_bam_contig_depths
bug major resolved
#66: std::transform performs terribly
bug major resolved
#61: Replace Scons build framework with CMake
enhancement major resolved
#36: How the depth of contig was calculated, why it's different from samtool result.
enhancement major resolved
#30: Create metabat docker container?
proposal minor resolved
#29: detect unsorted bams and report to the user
enhancement major resolved