Error install with upcxx 2020

[Ngoc Phuong Chau]

‌

Module list:

1. StdEnv (S)
2. GCCcore/7.3.0
3. zlib/1.2.11-GCCcore-7.3.0 (H)
4. binutils/2.30-GCCcore-7.3.0 (H)
5. GCC/7.3.0-2.30
6. hpcx/2.4
7. OpenMPI/3.1.1-GCC-7.3.0-2.30
8. OpenBLAS/0.3.1-GCC-7.3.0-2.30
9. gompi/2018b
10. FFTW/3.3.8-gompi-2018b
11. ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1
12. foss/2018b
13. bzip2/1.0.6-GCCcore-7.3.0 (H)
14. ncurses/6.1-GCCcore-7.3.0 (H)
15. libreadline/7.0-GCCcore-7.3.0 (H)
16. GMP/6.1.2-GCCcore-7.3.0 (H)
17. libffi/3.2.1-GCCcore-7.3.0 (H)
18. Python/2.7.15-foss-2018b

Where:
S: Module is Sticky, requires --force to unload or purge
H: Hidden Module

(base) [[e-mail] ~/downloads/upcxx-2020.3.0]$ echo $CXX
mpicxx
(base) [[e-mail] ~/downloads/upcxx-2020.3.0]$ echo $CC
gcc

./install ~/upcxx

---

ERROR

GASNet configuration:

Portable conduits:

Portable SMP-loopback conduit (smp) ON (enabled)
Portable UDP/IP conduit (udp) ON (auto)
Portable MPI conduit (mpi) ON (auto)

Native, high-performance conduits:

Unified Communication X conduit (ucx) OFF (auto)
InfiniBand IB Verbs conduit (ibv) ON (auto)
Cray XC Aries conduit (aries) OFF (not found)

Some conduits require --enable-XXX configure flags and/or additional
variables providing the install location of vendor drivers.
See the GASNet documentation for details.

Misc Settings

MPI compatibility: yes

Pthreads support: yes
Segment config: fast
PSHM support: posix
BLCR support: no
Atomics support: native
PMI support: yes (version=x)

make[1]: *** [Makefile:532: install] Error 2

---

UPC++ installation failed. Please report the ENTIRE log above to: [e-mail]

---

make[1]: *** [/cluster/home/cnphuong/downloads/upcxx-2020.3.0/bld/Makefile.rules:86: failure] Error 1
make: *** [/cluster/home/cnphuong/downloads/upcxx-2020.3.0/bld/Makefile.rules:35: install] Error 2
UPC++ Installation failed. Please report the ENTIRE log above to: [e-mail]

‌

Last time, I installed it, and it worked.

[Paul Hargrove]

Sorry to hear of your problems.
However, you have not provided enough information for us to diagnose the issue.

Please attach the entire output of the failed run of the installation.
You can find "Attach files" under the "More v" button near the upper-right corner of the Bitbucket issue tracker page.

I would additionally encourage you to use the new configure-based installation process rather than the legacy ./install script. Please read INSTALL.md for details.

However, if you wish to continue using the legacy installer, it would be helpful if you could set UPCXX_MAKE=make in your environment to disable parallelism in the install process (making the error messages easier to read).

[Ngoc Phuong Chau]

I try to install with version 2019.9. There is the same error. Please see the attached file.

Thanks

[Ngoc Phuong Chau]

The server links to gcc in Anaconda3. I delete it on bashrc file. And it worked.

[Dan Bonachea]

Hi Ngoc -

As explained in the error message, the problem is these variables set in your environment:

checking for CFLAGS setting...             (provided) "-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /cluster/software/Anaconda3/2019.03/include"
checking for CPP setting...                (provided) "/cluster/software/Anaconda3/2019.03/bin/x86_64-conda_cos6-linux-gnu-cpp"
checking for CPPFLAGS setting...           (provided) "-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /cluster/software/Anaconda3/2019.03/include"
checking for LDFLAGS setting...            (provided) "-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/cluster/software/Anaconda3/2019.03/lib -Wl,-rpath-link,/cluster/software/Anaconda3/2019.03/lib -L/cluster/software/Anaconda3/2019.03/lib"
checking for CXXFLAGS setting...           (provided) "-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /cluster/software/Anaconda3/2019.03/include"

It looks like some of these were probably injected by the Anaconda python software, so you might start by unloading whatever module pulled that in. Otherwise you can just change these variables in your environment before running the UPC++ installer.

You'll need to remove at least -O2 and -DNDEBUG from all of these variables. Also, the CPP setting is probably wrong and should also be unset.