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Database connection broken pipes (after inactivity)

Issue #1927 resolved
Former user created an issue

New Puma systems, which are infrequently used report:

[2014-03-05 18:49:23,956] [ERROR] [org.bibsonomy.webapp.util.spring.controller.MinimalisticControllerSpringWrapper] - Could not complete controller (general exception) for request //ajax/getBookmarkRecommendedTags?null with referer http://frankfurt.puma.bibliothek.uni-kassel.de/editBookmark
java.lang.RuntimeException: Couldn't execute query 'addRecommenderQuery'
    at org.bibsonomy.util.ExceptionUtils.logErrorAndThrowRuntimeException(ExceptionUtils.java:56)
    at org.bibsonomy.database.common.impl.DBSessionImpl.logException(DBSessionImpl.java:342)
    at org.bibsonomy.database.common.impl.DBSessionImpl.handleException(DBSessionImpl.java:332)
    at org.bibsonomy.database.common.impl.DBSessionImpl.handleException(DBSessionImpl.java:267)
    at org.bibsonomy.database.common.impl.DBSessionImpl.insert(DBSessionImpl.java:233)
    at org.bibsonomy.database.common.AbstractDatabaseManager.insert(AbstractDatabaseManager.java:97)
    at org.bibsonomy.recommender.connector.database.session.RecommenderDatabaseManagerImpl.processInsertQuery(RecommenderDatabaseManagerImpl.java:31)
    at org.bibsonomy.recommender.connector.database.DBLogConfigBibSonomy.addQuery(DBLogConfigBibSonomy.java:70)
    at org.bibsonomy.recommender.connector.database.DBLogConfigBibSonomy.addQuery(DBLogConfigBibSonomy.java:39)
    at recommender.impl.multiplexer.MultiplexingRecommender.addRecommendation(MultiplexingRecommender.java:515)
    at recommender.impl.multiplexer.MultiplexingRecommender.getRecommendation(MultiplexingRecommender.java:598)
    at org.bibsonomy.webapp.controller.ajax.RecommendationsAjaxController.workOn(RecommendationsAjaxController.java:122)
    at org.bibsonomy.webapp.controller.ajax.RecommendationsAjaxController.workOn(RecommendationsAjaxController.java:49)
    at org.bibsonomy.webapp.util.spring.controller.MinimalisticControllerSpringWrapper.handleRequestInternal(MinimalisticControllerSpringWrapper.java:202)
    at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153)
    at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:48)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:923)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:852)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:882)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:789)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:176)
    at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:145)
    at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:92)
    at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:381)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.NoCacheFilter.doFilter(NoCacheFilter.java:61)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at filters.ActionValidationFilter.doFilter(ActionValidationFilter.java:100)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.bibsonomy.webapp.filters.LimitedUserFilter.doFilter(LimitedUserFilter.java:34)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:118)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:84)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.util.spring.security.filter.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:58)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:103)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.rememberme.RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter.java:146)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:183)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.util.spring.security.filter.ParameterTriggeredAutoLoginFilter.doFilter(ParameterTriggeredAutoLoginFilter.java:42)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:183)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:186)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:166)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.filters.HttpsPretendingFilter.doFilter(HttpsPretendingFilter.java:33)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.saml.metadata.MetadataGeneratorFilter.doFilter(MetadataGeneratorFilter.java:78)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:192)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:160)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.ContentNegotiationFilter.doFilter(ContentNegotiationFilter.java:90)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.ContextPathFilter.doFilter(ContextPathFilter.java:162)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
    at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:861)
    at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:606)
    at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
    at java.lang.Thread.run(Thread.java:662)
Caused by: com.ibatis.common.jdbc.exception.NestedSQLException:   
--- The error occurred in log_tags/RecommendationLogBibSonomy.xml.  
--- The error occurred while executing mapped statement.  
--- Check the addRecommenderQuery.  
--- Check the statement or the result map.  
--- Cause: com.mysql.jdbc.CommunicationsException: Communications link failure due to underlying exception: 

** BEGIN NESTED EXCEPTION ** 

java.net.SocketException
MESSAGE: Broken pipe

STACKTRACE:

java.net.SocketException: Broken pipe
    at java.net.SocketOutputStream.socketWrite0(Native Method)
    at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:92)
    at java.net.SocketOutputStream.write(SocketOutputStream.java:136)
    at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65)
    at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123)
    at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:2744)
    at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1612)
    at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:1723)
    at com.mysql.jdbc.Connection.execSQL(Connection.java:3277)
    at com.mysql.jdbc.Connection.setAutoCommit(Connection.java:5442)
    at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:371)
    at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:328)
    at sun.reflect.GeneratedMethodAccessor43.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
    at java.lang.reflect.Method.invoke(Method.java:597)
    at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:239)
    at com.sun.proxy.$Proxy22.setAutoCommit(Unknown Source)
    at com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransaction.init(JdbcTransaction.java:56)
    at com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransaction.getConnection(JdbcTransaction.java:89)
    at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeUpdate(MappedStatement.java:94)
    at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.insert(SqlMapExecutorDelegate.java:393)
    at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.insert(SqlMapSessionImpl.java:82)
    at org.bibsonomy.database.common.impl.DBSessionImpl.insert(DBSessionImpl.java:231)
    at org.bibsonomy.database.common.AbstractDatabaseManager.insert(AbstractDatabaseManager.java:97)
    at org.bibsonomy.recommender.connector.database.session.RecommenderDatabaseManagerImpl.processInsertQuery(RecommenderDatabaseManagerImpl.java:31)
    at org.bibsonomy.recommender.connector.database.DBLogConfigBibSonomy.addQuery(DBLogConfigBibSonomy.java:70)
    at org.bibsonomy.recommender.connector.database.DBLogConfigBibSonomy.addQuery(DBLogConfigBibSonomy.java:39)
    at recommender.impl.multiplexer.MultiplexingRecommender.addRecommendation(MultiplexingRecommender.java:515)
    at recommender.impl.multiplexer.MultiplexingRecommender.getRecommendation(MultiplexingRecommender.java:598)
    at org.bibsonomy.webapp.controller.ajax.RecommendationsAjaxController.workOn(RecommendationsAjaxController.java:122)
    at org.bibsonomy.webapp.controller.ajax.RecommendationsAjaxController.workOn(RecommendationsAjaxController.java:49)
    at org.bibsonomy.webapp.util.spring.controller.MinimalisticControllerSpringWrapper.handleRequestInternal(MinimalisticControllerSpringWrapper.java:202)
    at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153)
    at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:48)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:923)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:852)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:882)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:789)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:176)
    at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:145)
    at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:92)
    at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:381)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.NoCacheFilter.doFilter(NoCacheFilter.java:61)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at filters.ActionValidationFilter.doFilter(ActionValidationFilter.java:100)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.bibsonomy.webapp.filters.LimitedUserFilter.doFilter(LimitedUserFilter.java:34)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:118)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:84)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.util.spring.security.filter.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:58)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:103)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.rememberme.RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter.java:146)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:183)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.util.spring.security.filter.ParameterTriggeredAutoLoginFilter.doFilter(ParameterTriggeredAutoLoginFilter.java:42)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:183)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:186)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:166)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.filters.HttpsPretendingFilter.doFilter(HttpsPretendingFilter.java:33)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.saml.metadata.MetadataGeneratorFilter.doFilter(MetadataGeneratorFilter.java:78)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:192)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:160)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.ContentNegotiationFilter.doFilter(ContentNegotiationFilter.java:90)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.ContextPathFilter.doFilter(ContextPathFilter.java:162)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
    at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:861)
    at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:606)
    at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
    at java.lang.Thread.run(Thread.java:662)


** END NESTED EXCEPTION **



Last packet sent to the server was 1 ms ago.
    at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeUpdate(MappedStatement.java:107)
    at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.insert(SqlMapExecutorDelegate.java:393)
    at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.insert(SqlMapSessionImpl.java:82)
    at org.bibsonomy.database.common.impl.DBSessionImpl.insert(DBSessionImpl.java:231)
    ... 98 more
Caused by: com.mysql.jdbc.CommunicationsException: Communications link failure due to underlying exception: 

** BEGIN NESTED EXCEPTION ** 

java.net.SocketException
MESSAGE: Broken pipe

STACKTRACE:

java.net.SocketException: Broken pipe
    at java.net.SocketOutputStream.socketWrite0(Native Method)
    at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:92)
    at java.net.SocketOutputStream.write(SocketOutputStream.java:136)
    at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65)
    at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123)
    at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:2744)
    at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1612)
    at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:1723)
    at com.mysql.jdbc.Connection.execSQL(Connection.java:3277)
    at com.mysql.jdbc.Connection.setAutoCommit(Connection.java:5442)
    at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:371)
    at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:328)
    at sun.reflect.GeneratedMethodAccessor43.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
    at java.lang.reflect.Method.invoke(Method.java:597)
    at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:239)
    at com.sun.proxy.$Proxy22.setAutoCommit(Unknown Source)
    at com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransaction.init(JdbcTransaction.java:56)
    at com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransaction.getConnection(JdbcTransaction.java:89)
    at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeUpdate(MappedStatement.java:94)
    at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.insert(SqlMapExecutorDelegate.java:393)
    at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.insert(SqlMapSessionImpl.java:82)
    at org.bibsonomy.database.common.impl.DBSessionImpl.insert(DBSessionImpl.java:231)
    at org.bibsonomy.database.common.AbstractDatabaseManager.insert(AbstractDatabaseManager.java:97)
    at org.bibsonomy.recommender.connector.database.session.RecommenderDatabaseManagerImpl.processInsertQuery(RecommenderDatabaseManagerImpl.java:31)
    at org.bibsonomy.recommender.connector.database.DBLogConfigBibSonomy.addQuery(DBLogConfigBibSonomy.java:70)
    at org.bibsonomy.recommender.connector.database.DBLogConfigBibSonomy.addQuery(DBLogConfigBibSonomy.java:39)
    at recommender.impl.multiplexer.MultiplexingRecommender.addRecommendation(MultiplexingRecommender.java:515)
    at recommender.impl.multiplexer.MultiplexingRecommender.getRecommendation(MultiplexingRecommender.java:598)
    at org.bibsonomy.webapp.controller.ajax.RecommendationsAjaxController.workOn(RecommendationsAjaxController.java:122)
    at org.bibsonomy.webapp.controller.ajax.RecommendationsAjaxController.workOn(RecommendationsAjaxController.java:49)
    at org.bibsonomy.webapp.util.spring.controller.MinimalisticControllerSpringWrapper.handleRequestInternal(MinimalisticControllerSpringWrapper.java:202)
    at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153)
    at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:48)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:923)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:852)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:882)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:789)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:176)
    at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:145)
    at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:92)
    at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:381)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.NoCacheFilter.doFilter(NoCacheFilter.java:61)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at filters.ActionValidationFilter.doFilter(ActionValidationFilter.java:100)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.bibsonomy.webapp.filters.LimitedUserFilter.doFilter(LimitedUserFilter.java:34)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:118)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:84)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.util.spring.security.filter.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:58)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:103)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.rememberme.RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter.java:146)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:183)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.util.spring.security.filter.ParameterTriggeredAutoLoginFilter.doFilter(ParameterTriggeredAutoLoginFilter.java:42)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:183)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:186)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:166)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.bibsonomy.webapp.filters.HttpsPretendingFilter.doFilter(HttpsPretendingFilter.java:33)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.saml.metadata.MetadataGeneratorFilter.doFilter(MetadataGeneratorFilter.java:78)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:192)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:160)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.ContentNegotiationFilter.doFilter(ContentNegotiationFilter.java:90)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.bibsonomy.webapp.filters.ContextPathFilter.doFilter(ContextPathFilter.java:162)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
    at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:861)
    at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:606)
    at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
    at java.lang.Thread.run(Thread.java:662)


** END NESTED EXCEPTION **



Last packet sent to the server was 1 ms ago.
    at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:2759)
    at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1612)
    at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:1723)
    at com.mysql.jdbc.Connection.execSQL(Connection.java:3277)
    at com.mysql.jdbc.Connection.setAutoCommit(Connection.java:5442)
    at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:371)
    at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:328)
    at sun.reflect.GeneratedMethodAccessor43.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
    at java.lang.reflect.Method.invoke(Method.java:597)
    at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:239)
    at com.sun.proxy.$Proxy22.setAutoCommit(Unknown Source)
    at com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransaction.init(JdbcTransaction.java:56)
    at com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransaction.getConnection(JdbcTransaction.java:89)
    at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeUpdate(MappedStatement.java:94)
    ... 101 more

Comments (6)

  1. Daniel Zoller

    The reason for this is that we use a connection pool. In this pool there are connections that the MySQL server already closed because of inactivity (wait_timeout). Two possible solutions:

    • increase wait_timeout
    • configure the pool to validate the connection before borrow the connection to the application, an example how to config this in a spring bean config file:
    <bean id="dataSource" class="org.apache.commons.dbcp.BasicDataSource" destroy-method="close">
  <property name="driverClassName" value="${jdbc.driverClassName}" />
  <property name="url" value="${jdbc.url}" />
  <property name="username" value="${jdbc.username}" />
  <property name="password" value="${jdbc.password}" />
  <property name="validationQuery" value="select 42" />
  <property name="minEvictableIdleTimeMillis" value="1800000" />
  <property name="timeBetweenEvictionRunsMillis" value="1800000" />
  <property name="numTestsPerEvictionRun" value="10" />
  <property name="testWhileIdle" value="true" />
  <property name="testOnBorrow" value="true" />
  <property name="testOnReturn" value="false" />
</bean>
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Assignee
–
Type
bug
Priority
minor
Status
resolved
Component
database
Milestone
3.3
Version
–
Votes
0
Watchers
0
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