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orange-bioinformatics / docs / rst / reference / omim.rst

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Marko Toplak 42a5e77 
























.. py:currentmodule:: Orange.bio.obiOMIM

.. index:: NCBI
.. index:: OMIM

**************************************************************
OMIM: Online Mendelian Inheritance in Man (:mod:`obiOMIM`)
**************************************************************

:obj:`obiOMIM` provides an interface to 
`Online Mendelian Inheritance in Man <http://www.ncbi.nlm.nih.gov/omim>`_
database. For now it only supports mapping genes to diseases.

.. autofunction:: diseases

.. autofunction:: genes

.. autofunction:: disease_genes

.. autofunction:: gene_diseases

The following example creates a network of connected diseases and save it in pajek .net format 
sets information file (:download:`omim_disease_network.py <code/omim_disease_network.py>`).

.. literalinclude:: code/omim_disease_network.py