Commits

Marko Toplak committed 28ae945

Deleted an obsolete update script.

  • Participants
  • Parent commits 338084e

Comments (0)

Files changed (1)

File server_update/updateAll.py

-import sys, os
-import subprocess
-import time
-
-from getopt import getopt
-from datetime import datetime
-
-opt = dict(getopt(sys.argv[1:], "u:p:", ["user=", "password="])[0])
-
-username = opt.get("-u", opt.get("--user", "username"))
-password = opt.get("-p", opt.get("--password", "password"))
-
-age = datetime.now() - datetime.fromtimestamp(0) ## age of the universe
-
-files = ["updateTaxonomy.py", "updateGO.py", "updateMeSH.py", "updateNCBI_geneinfo.py",
-         "updateHomoloGene.py", "updateDictyBase.py", "updatePPI.py"]
-
-for filename in files:
-    options = dict([line[3:].split("=") for line in open(filename).readlines() if line.startswith("##!")])
-    if age.days % int(options.get("interval", "7")) == 0:
-        output = open("log.txt", "w")
-        process = subprocess.Popen([sys.executable, filename, "-u", username, "-p", password], stdout=output, stderr=output)
-        while process.poll() == None:
-            time.sleep(3)
-#        print "/sw/bin/python2.5 %s -u %s -p %s" % (filename, username, password)
-#        print os.system("/sw/bin/python2.5 %s -u %s -p %s" % (filename, username, password))
-        output.close()
-        if process.poll() != 0:
-            content = open("log.txt", "r").read()
-            print content
-            toaddr = options.get("contact", "ales.erjavec@fri.uni-lj.si")
-            fromaddr = "orange@fri.uni-lj.si"
-            msg = "From: %s\r\nTo: %s\r\nSubject: Exception in server update script - %s\r\n\r\n" % (fromaddr, toaddr, filename) + content
-            try:
-                import smtplib
-                s = smtplib.SMTP('212.235.188.18', 25)
-                s.sendmail(fromaddr, toaddr, msg)
-                s.quit()
-            except Exception, ex:
-                print "Failed to send error report due to:", ex
-