Author Commit Message Labels Comments Date
Marko Toplak avatarMarko Toplak
obiGeneSetSig: slow implementation of LLR to test correctness
Marko Toplak avatarMarko Toplak
obiGeneSetSig: Prevent crashing of LLR if the standard deviation is zero.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: data caches get reset at build_features instead of __call__.
Marko Toplak avatarMarko Toplak
Version bump.
Marko Toplak avatarMarko Toplak
Merged changes from Vid's branch.
Flashpoint avatarFlashpoint
Added Reactome Pathways genesets for humans
Flashpoint avatarFlashpoint
obiOMIM.py is now correctly updated
Flashpoint avatarFlashpoint
Merged obiOMIM.py latest commit
Flashpoint avatarFlashpoint
Removed obiCytobands.py and created genesets in obiGeneSets.py. updateCytobands.py saves only genesets now
Flashpoint avatarFlashpoint
Added Cytobands genesets and modified obiOMIM.py. Both need some extra work.
Flashpoint avatarFlashpoint
P-values greater than 0.001 are now displayed with regular notation in the OWSetEnrichment.py
Flashpoint avatarFlashpoint
Added a documentation entry for obiDictyMutants.py
Flashpoint avatarFlashpoint
Sorting according to p-values works.
Marko Toplak avatarMarko Toplak
Added obiDictyMutants to the documentation index.
Marko Toplak avatarMarko Toplak
Merged biolab/orange-bioinformatics into default
Flashpoint avatarFlashpoint
Deleted redundant files on the Orange server
Flashpoint avatarFlashpoint
Deleted redundant files on the Orange server
Marko Toplak avatarMarko Toplak
obiGeneSetSig: SPCA with threshold selection by permutation.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: added SPCA.
Marko Toplak avatarMarko Toplak
OMIM: uses server files version by default.
Marko Toplak avatarMarko Toplak
Register already calls update_server_list internally.
Flashpoint avatarFlashpoint
Added Phenotypes to DictyMutants hierarchy
Flashpoint avatarFlashpoint
First attempt at configuring Orange server update
Flashpoint avatarFlashpoint
DictyMutants geneset working
Flashpoint avatarFlashpoint
Merged biolab/orange-bioinformatics into default
Flashpoint avatarFlashpoint
Added pickling to obiDictyMutants.py, changed the URL in obiGeneSets.py's omimGeneSets()
Flashpoint avatarFlashpoint
obiDictyMutants now functional
Flashpoint avatarFlashpoint
obiDictyMutants now functional
Marko Toplak avatarMarko Toplak
obiGeneSetSig: LLR uses combined standard deviation if a standard deviation for a class was zero (this can happen as an artifict of bootstrap sampling).
Marko Toplak avatarMarko Toplak
obiGeneSetSig: added another method based on likelihood ratios by Su et al (2009).
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