Author Commit Message Labels Comments Date
Marko Toplak avatarMarko Toplak
Renamed inputs and outputs of gene set enrichment widget.
Marko Toplak avatarMarko Toplak
Gene set enrichment widget detects gene sets with taxid == None.
Marko Toplak avatarMarko Toplak
OWtest can now appear in canvas.
Flashpoint avatarFlashpoint
The OWtest.py prototype widget for custom gene sets now correctly imports and deletes the genesets
Flashpoint avatarFlashpoint
The prototype widget for adding and removing custom gene sets
Flashpoint avatarFlashpoint
Added functionality to obiGeneSets.py to remove locally stored gene sets. Created a prototype widget OWtest.py to store and remove own gene sets. The front-end still needs work
Aleš Erjavec avatarAleš Erjavec
Fixed progress bar initialization (call order) in Gene Set Enrichment.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: slow implementation of LLR to test correctness
Marko Toplak avatarMarko Toplak
obiGeneSetSig: Prevent crashing of LLR if the standard deviation is zero.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: data caches get reset at build_features instead of __call__.
Marko Toplak avatarMarko Toplak
Version bump.
Marko Toplak avatarMarko Toplak
Merged changes from Vid's branch.
Flashpoint avatarFlashpoint
Added Reactome Pathways genesets for humans
Flashpoint avatarFlashpoint
obiOMIM.py is now correctly updated
Flashpoint avatarFlashpoint
Merged obiOMIM.py latest commit
Flashpoint avatarFlashpoint
Removed obiCytobands.py and created genesets in obiGeneSets.py. updateCytobands.py saves only genesets now
Flashpoint avatarFlashpoint
Added Cytobands genesets and modified obiOMIM.py. Both need some extra work.
Flashpoint avatarFlashpoint
P-values greater than 0.001 are now displayed with regular notation in the OWSetEnrichment.py
Flashpoint avatarFlashpoint
Added a documentation entry for obiDictyMutants.py
Flashpoint avatarFlashpoint
Sorting according to p-values works.
Marko Toplak avatarMarko Toplak
Added obiDictyMutants to the documentation index.
Marko Toplak avatarMarko Toplak
Merged biolab/orange-bioinformatics into default
Flashpoint avatarFlashpoint
Deleted redundant files on the Orange server
Flashpoint avatarFlashpoint
Deleted redundant files on the Orange server
Marko Toplak avatarMarko Toplak
obiGeneSetSig: SPCA with threshold selection by permutation.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: added SPCA.
Marko Toplak avatarMarko Toplak
OMIM: uses server files version by default.
Marko Toplak avatarMarko Toplak
Register already calls update_server_list internally.
Flashpoint avatarFlashpoint
Added Phenotypes to DictyMutants hierarchy
Flashpoint avatarFlashpoint
First attempt at configuring Orange server update
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