Commits

Author Commit Message Labels Comments Date
Aleš Erjavec
Added sphinx rst documentation for obiKEGG.
Aleš Erjavec
Changed the Organism.gene_aliases method.
Aleš Erjavec
obiKEGG code style fixes.
Aleš Erjavec
Porting obiKEGG to use the new REST KEGG API.
Aleš Erjavec
Merge
Aleš Erjavec
Changed 'orange.Orange' to 'orange.OrangeBase'.
Aleš Erjavec
Added category description for the new canvas interface.
Aleš Erjavec
Added svg icon for Databases widget.
Marko Toplak
Added an option in Assess to not ignore umatchable context.
Aleš Erjavec
Create the destination directory if it does not exist.
Aleš Erjavec
Added new icons by Peter Cuhalev and replaced existing ones with expanded paths.
Marko Toplak
obiGeneSetSig: assess now works even if gene matcher did not perfectly match the whole file.
Marko Toplak
Version bump.
Marko Toplak
SetSig uses statc for pearsonr. Around 10x speedup compared to numpy.
Marko Toplak
updatemiRNA script now also works.
Marko Toplak
Moved common functionality of the server files update scripts to a separate file.
Marko Toplak
Fixed update scripts for STRING and Taxonomy.
Marko Toplak
Fixed update scripts for MeSH, GO, HomoloGene, NCBI_geneinfo, OMIM, PPI. Moved wget to Orange.utils.
Marko Toplak
Removed KEGG update scripts, updated (and ran) dicty base and GEO.
Marko Toplak
Copied server update scripts from Orange source.
Marko Toplak
Removed the old version of obiKEGG. Renamed obiKEGG2 -> obiKEGG.
Marko Toplak
Removed use of the old obiKEGG module. Hacked a REST version for gene aliases in obiKEGG2.
Marko Toplak
Updated the description.
Marko Toplak
Fixes for obiGeneSets. Compatible files were generated and uploaded to SF.
Marko Toplak
Classes for storing gene set data moved to Orange.bio.geneset. obiGeneSets adapted to make new pickled classes.
Marko Toplak
obiGeneSetSig: speedup of ASSESS.
Aleš Erjavec
Added 'Enrichment Report' output to the GO Browser widget.
Marko Toplak
Speed up PCA and PLS (obiGeneSetSig).
Marko Toplak
Another speedup of SetSig. Now it is 30% faster on DLBCL.tab with no_unknowns=True.
Marko Toplak
Speed up of setsig (obiGeneSetSig).
  1. Prev
  2. Next