Author Commit Message Labels Comments Date
Marko Toplak avatarMarko Toplak
Small changes to miRNA update scripts. Added title and tags to elements that were missing it.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: CORG were build a gene too large (fixed). SetSig has the option to check if the examples are exactly alike and discard the distance between them.
Aleš Erjavec avatarAleš Erjavec
Fixed 'Ontology' and 'Annotations' stream parsing.
Aleš Erjavec avatarAleš Erjavec
'Ontology.__getitem__' now raises a KeyError for an unknown term id.
Aleš Erjavec avatarAleš Erjavec
Filter out terms from the annotations that are not present in the ontology.
Aleš Erjavec avatarAleš Erjavec
Removed deprecated and nonfunctioning 'drawEnrichmentGraph_tostream' function.
Aleš Erjavec avatarAleš Erjavec
obiGO code style fixes.
Flashpoint avatarFlashpoint
Added obiDictyMutants.py
Flashpoint avatarFlashpoint
Added obiDictyMutants.py
Flashpoint avatarFlashpoint
Merged biolab/orange-bioinformatics into default
Flashpoint avatarFlashpoint
Fixed several syntax errors
Flashpoint avatarFlashpoint
Deleted unused imports
Flashpoint avatarFlashpoint
Added obiDictyMutants.py
Aleš Erjavec avatarAleš Erjavec
Optimized DBDatabase batch_get/pre_cache w.r.t. number of separate network requests.
Marko Toplak avatarMarko Toplak
Deleted an obsolete update script.
Marko Toplak avatarMarko Toplak
Removed KEGG as the current KEGG script does not uses serverfiles.
Aleš Erjavec avatarAleš Erjavec
Disabled automatic cache invalidation.
Marko Toplak avatarMarko Toplak
STRING database build: do not unzip files.
Marko Toplak avatarMarko Toplak
Merge.
Marko Toplak avatarMarko Toplak
Update scripts: warn if username and password are not passed.
Marko Toplak avatarMarko Toplak
Update script for STRING: reads current version from the webpage and updates only if the database version on SF server differs.
Marko Toplak avatarMarko Toplak
Update script for gene sets.
Aleš Erjavec avatarAleš Erjavec
Fixed KEGG Pathway Browser organism list initialization.
Aleš Erjavec avatarAleš Erjavec
Using a single global Genome instance in obiKEGG module level functions.
Aleš Erjavec avatarAleš Erjavec
Optimized Gsea widget organism list initialization.
Aleš Erjavec avatarAleš Erjavec
Test for the presence of 'self.signalManager'.
Marko Toplak avatarMarko Toplak
KEGG organism name finding fixes.
Aleš Erjavec avatarAleš Erjavec
Deleted old and obsolete obiKEGG.py module
Aleš Erjavec avatarAleš Erjavec
Fixed 'organism_name_search' method.
Aleš Erjavec avatarAleš Erjavec
Moved old obiKEGG tests inside the obiKEGG package.
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