Commits

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Author Commit Message Labels Comments Date
Flashpoint
Created the obiGeneAtlasSets.py script, to easily prepare gene sets from GXA
Flashpoint
Added some missing info to the obiGeneAtlas.py API
Flashpoint
Shortened the p_val display statement in OWSetEnrichment.py
Flashpoint
Merged biolab/orange-bioinformatics into default
Marko Toplak
Moved custom sets to the main widgets.
Marko Toplak
Minor changes in widget appearance.
Flashpoint
Fixed the bug of having less than 5 genes in a geneset
Flashpoint
Version 2 of the OWCustomSet.py widget
Flashpoint
Version 1 of the OWCustomSet.py widget
Flashpoint
The opened files are now directly imported as custom genesets in OWCustomSets.py
Flashpoint
Changed the hierarchy name of Custom gene sets in obiGeneSets.py. Moved the statistics information about genesets into an info bar.
Flashpoint
The OWCustomSets.py widget's preview pane has been improved to show a quick overview fo the selected file and some additional statistics information has been added to the treeview of the genesets.
Flashpoint
Added a genesets statistics function to obiGeneSets.py. Added additional columns in OWCustomSets.py
Flashpoint
Removed the .pyc files from the commit
Flashpoint
Custom genesets now use Custom Genesets hierarchy in obiGeneSets.py. Renamed OWtest.py to OWCustomSets.py and renamed the widget from test to Custom Gene Sets. Added a preview window to quickly view geneset files before importing them.
Flashpoint
Merged biolab/orange-bioinformatics into default
Marko Toplak
Renamed inputs and outputs of gene set enrichment widget.
Marko Toplak
Gene set enrichment widget detects gene sets with taxid == None.
Marko Toplak
OWtest can now appear in canvas.
Flashpoint
The OWtest.py prototype widget for custom gene sets now correctly imports and deletes the genesets
Flashpoint
The prototype widget for adding and removing custom gene sets
Flashpoint
Added functionality to obiGeneSets.py to remove locally stored gene sets. Created a prototype widget OWtest.py to store and remove own gene sets. The front-end still needs work
Aleš Erjavec
Fixed progress bar initialization (call order) in Gene Set Enrichment.
Marko Toplak
obiGeneSetSig: slow implementation of LLR to test correctness
Marko Toplak
obiGeneSetSig: Prevent crashing of LLR if the standard deviation is zero.
Marko Toplak
obiGeneSetSig: data caches get reset at build_features instead of __call__.
Marko Toplak
Version bump.
Marko Toplak
Merged changes from Vid's branch.
Flashpoint
Added Reactome Pathways genesets for humans
Flashpoint
obiOMIM.py is now correctly updated
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