Commits

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Author Commit Message Labels Comments Date
Marko Toplak avatarMarko Toplak
Added obiDictyMutants to the documentation index.
Marko Toplak avatarMarko Toplak
Merged biolab/orange-bioinformatics into default
Flashpoint avatarFlashpoint
Deleted redundant files on the Orange server
Flashpoint avatarFlashpoint
Deleted redundant files on the Orange server
Marko Toplak avatarMarko Toplak
obiGeneSetSig: SPCA with threshold selection by permutation.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: added SPCA.
Marko Toplak avatarMarko Toplak
OMIM: uses server files version by default.
Marko Toplak avatarMarko Toplak
Register already calls update_server_list internally.
Flashpoint avatarFlashpoint
Added Phenotypes to DictyMutants hierarchy
Flashpoint avatarFlashpoint
First attempt at configuring Orange server update
Flashpoint avatarFlashpoint
DictyMutants geneset working
Flashpoint avatarFlashpoint
Merged biolab/orange-bioinformatics into default
Flashpoint avatarFlashpoint
Added pickling to obiDictyMutants.py, changed the URL in obiGeneSets.py's omimGeneSets()
Flashpoint avatarFlashpoint
obiDictyMutants now functional
Flashpoint avatarFlashpoint
obiDictyMutants now functional
Marko Toplak avatarMarko Toplak
obiGeneSetSig: LLR uses combined standard deviation if a standard deviation for a class was zero (this can happen as an artifict of bootstrap sampling).
Marko Toplak avatarMarko Toplak
obiGeneSetSig: added another method based on likelihood ratios by Su et al (2009).
Marko Toplak avatarMarko Toplak
Small changes to miRNA update scripts. Added title and tags to elements that were missing it.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: CORG were build a gene too large (fixed). SetSig has the option to check if the examples are exactly alike and discard the distance between them.
Aleš Erjavec avatarAleš Erjavec
Fixed 'Ontology' and 'Annotations' stream parsing.
Aleš Erjavec avatarAleš Erjavec
'Ontology.__getitem__' now raises a KeyError for an unknown term id.
Aleš Erjavec avatarAleš Erjavec
Filter out terms from the annotations that are not present in the ontology.
Aleš Erjavec avatarAleš Erjavec
Removed deprecated and nonfunctioning 'drawEnrichmentGraph_tostream' function.
Aleš Erjavec avatarAleš Erjavec
obiGO code style fixes.
Flashpoint avatarFlashpoint
Added obiDictyMutants.py
Flashpoint avatarFlashpoint
Added obiDictyMutants.py
Flashpoint avatarFlashpoint
Merged biolab/orange-bioinformatics into default
Flashpoint avatarFlashpoint
Fixed several syntax errors
Flashpoint avatarFlashpoint
Deleted unused imports
Flashpoint avatarFlashpoint
Added obiDictyMutants.py
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