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Author Commit Message Labels Comments Date
Flashpoint avatarFlashpoint
Fixed the bug of having less than 5 genes in a geneset
Flashpoint avatarFlashpoint
Version 2 of the OWCustomSet.py widget
Flashpoint avatarFlashpoint
Version 1 of the OWCustomSet.py widget
Flashpoint avatarFlashpoint
The opened files are now directly imported as custom genesets in OWCustomSets.py
Flashpoint avatarFlashpoint
Changed the hierarchy name of Custom gene sets in obiGeneSets.py. Moved the statistics information about genesets into an info bar.
Flashpoint avatarFlashpoint
The OWCustomSets.py widget's preview pane has been improved to show a quick overview fo the selected file and some additional statistics information has been added to the treeview of the genesets.
Flashpoint avatarFlashpoint
Added a genesets statistics function to obiGeneSets.py. Added additional columns in OWCustomSets.py
Flashpoint avatarFlashpoint
Removed the .pyc files from the commit
Flashpoint avatarFlashpoint
Custom genesets now use Custom Genesets hierarchy in obiGeneSets.py. Renamed OWtest.py to OWCustomSets.py and renamed the widget from test to Custom Gene Sets. Added a preview window to quickly view geneset files before importing them.
Flashpoint avatarFlashpoint
Merged biolab/orange-bioinformatics into default
Marko Toplak avatarMarko Toplak
Renamed inputs and outputs of gene set enrichment widget.
Marko Toplak avatarMarko Toplak
Gene set enrichment widget detects gene sets with taxid == None.
Marko Toplak avatarMarko Toplak
OWtest can now appear in canvas.
Flashpoint avatarFlashpoint
The OWtest.py prototype widget for custom gene sets now correctly imports and deletes the genesets
Flashpoint avatarFlashpoint
The prototype widget for adding and removing custom gene sets
Flashpoint avatarFlashpoint
Added functionality to obiGeneSets.py to remove locally stored gene sets. Created a prototype widget OWtest.py to store and remove own gene sets. The front-end still needs work
Aleš Erjavec avatarAleš Erjavec
Fixed progress bar initialization (call order) in Gene Set Enrichment.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: slow implementation of LLR to test correctness
Marko Toplak avatarMarko Toplak
obiGeneSetSig: Prevent crashing of LLR if the standard deviation is zero.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: data caches get reset at build_features instead of __call__.
Marko Toplak avatarMarko Toplak
Version bump.
Marko Toplak avatarMarko Toplak
Merged changes from Vid's branch.
Flashpoint avatarFlashpoint
Added Reactome Pathways genesets for humans
Flashpoint avatarFlashpoint
obiOMIM.py is now correctly updated
Flashpoint avatarFlashpoint
Merged obiOMIM.py latest commit
Flashpoint avatarFlashpoint
Removed obiCytobands.py and created genesets in obiGeneSets.py. updateCytobands.py saves only genesets now
Flashpoint avatarFlashpoint
Added Cytobands genesets and modified obiOMIM.py. Both need some extra work.
Flashpoint avatarFlashpoint
P-values greater than 0.001 are now displayed with regular notation in the OWSetEnrichment.py
Flashpoint avatarFlashpoint
Added a documentation entry for obiDictyMutants.py
Flashpoint avatarFlashpoint
Sorting according to p-values works.
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